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MEDA 2018

2nd Workshop on Curative Power of MEdical DAta

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June 6, 2018 – Fort Worth, Texas, USA

Workshop at JCDL 2018




Organising Committee


  • Diana Trandabăț ("Alexandru Ioan Cuza" University of Iași, Romania)
  • Daniela Gîfu ("Alexandru Ioan Cuza" University of Iași, Romania
    Romanian Academy - Iaşi branch)
  • Kevin Cohen (Computational Bioscience Program U. Colorado School of Medicine)
  • Jingbo Xia (Huazhong Agricultural University, P.R. China)

Prospective Program Committee


  • Gilles Adda (LIMSI-CNRS, Orsay)
  • Yannis Almirantis (National Center for Scientific Research Demokritos, Athens, Greece)
  • Anita Burgun (Paris Descartes University, INSERM Cordeliers Research Center, AP-HP
    Necker Children's Hospital and Georges Pompidou European Hospital)
  • Kevin Cohen (U. Colorado School of Medicine & Université Paris-Saclay, Orsay, France)
  • Trevor Cohen (University of Texas Health Science Center at Houston, School of Biomedical Informatics)
  • Edward A Fox (Virginia Tech, Blacksburg, VA, United States)
  • Eric Gaussier (Université Paris-Saclay, Orsay, France)
  • Daniela Gîfu ("Alexandru Ioan Cuza" University of Iași, Romania
    Romanian Academy - Iaşi branch)
  • Kishaloy Halder (School of Computing. National University of Singapore)
  • Zhiyong Lu (National Center for Biotechnology Information, Bethesda, Maryland)
  • Aurélie Névéol (LIMSI, CNRS, Université Paris-Saclay, Orsay, France)
  • Diana Trandabăț ("Alexandru Ioab Cuza" University of Iași, Romania)
  • Alfonso Valencia (CNIO, Spain)
  • Jingbo Xia (Huazhong Agricultural University, P.R. China)
  • Pierre Zweigenbaum (LIMSI, CNRS, Université Paris-Saclay, Orsay, France)







Call for papers


In an era when massive amounts of medical data became available, researchers working in biological, biomedical and clinical domains have increasingly started to require the help of language engineers to process large quantities of biomedical and molecular biology literature (such as PubMed), patient data or health records. Linking the contents of these documents to each other, as well as to specialized ontologies, could enable access to and discovery of structured clinical information and foster a major leap in natural language processing and health research.
MEDA-2018 aims to gather innovative approaches for the exploitation of biomedical data using semantic web technologies and linked data by bringing together practitioners, researchers, and scholars to share examples, use cases, theories and analysis of biomedical data. The main objective of this second edition workshop is to consolidate an internationally appreciated forum for scientific research in BioMed, with emphasis on crowdsourcing, semantic web, knowledge integration and data linking.

Topics

The scientific program of MEDA-2018 will focus around the following topics:



  • Crowdsourcing approaches in biomedicine
  • Collaborative computational technologies for biomedical research
  • Biomedical digital libraries
  • Mining biomedical literature
  • Event-based text mining for biology and related fields
  • Event and entity extraction in medical texts
  • Conceptual graphs extracted from medical texts
  • Annotation of semantic content, with applications in medicine and biology
  • Techniques for Big Data in Healthcare
  • Medical search engines
  • Distributed communication system in biomedical applications
  • Deep learning for bioinformatics
  • Biomedical question/answering
  • Biomedical topic modeling
  • Biomedical language systems
  • Text summarization in the biomedical domain.

Submission


We invite submissions of papers (up to 8 pages), representing original, previously unpublished research, innovative approaches and resource types, use cases or in-depth discussions.
Submissions must use the PDF file format and must adopt the style of the ACM Proceedings.
Submissions that exceed the page limit will be rejected without review.
All submissions must be submitted online through the EasyChair system following the submission link: https://easychair.org/conferences/?conf=meda2018.
Authors of all accepted papers will be invited to provide an extended version of their MEDA submission to be included in the Data Journal. Data is an open access journal on data in science, indexed in the Emerging Sources Citation Index (ESCI) - Web of Science and Inspec (IET).
To ensure high quality, all papers will be thoroughly reviewed by the MEDA2018 Program Committee. All reviews will be double blind, and hence authors are instructed not to include their identity, affiliation(s) or contact details, and to anonymity any references that would reveal the authorship of the paper. Papers submitted to other conferences or journals must state this fact.
At least one author of each paper must register using the JCDL registration page to have the paper published in the MEDA-2018 Proceedings. All accepted papers must be presented at the workshop by one of the authors. The registration for JCDL2018 workshops (including MEDA 2018) will be managed by the JCDL organizers. Information is not updated yet, but from our experience with the last edition of JCDL, the fee ranged from 50 to 150 dollars, depending on the type of registration. Early registration is expected to end around 30 April. Please come back later or visit JCDL registration page for updated information.

Important dates

Venue


MEDA-2018 will be held as a half-day workshop at JCDL2018 - Joint Conference on Digital Libraries, in the afternoon of the 6th of June, 2018, in Fort Worth, Texas, USA. The JCDL-2018 website offers detailed information about the city, the venue, how to get there, visa and accommodation opportunities.

Accepted papers


  • Mihaela Onofrei, Ionut Hulub, Diana Trandabat and Daniela Gifu
    Towards Identifying Author Confidence in Biomedical Articles

  • Ionut Pistol, Dan Cristea, Diana Trandabat and Madalina Raschip
    Generating Tests from Medical Reference Texts

  • Mihai Daneliuc, Roberta Rugina, Diana Trandabat and Daniela Gifu
    Semantic Content Extraction Based on Medical Data Set

  • Ahdi Hassan
    Developing a New Biomedical Corpora for Pakistan Languages

  • Maria Mitrofan, Verginica Barbu Mititelu and Grigorina Mitrofan
    Towards the Construction of a Gold Standard Biomedical Corpus for the Romanian Language

  • Yongyi Wang, Hui Zhang, Dan Wu and Jiangping Chen
    Health Data on Data.gov: A Preliminary Analysis

  • Hui Zhang, Yongyi Wang, Dan Wu and Jiangping Chen
    Evolutionary Path of Factors Influencing Life Satisfaction among Chinese Elderly: A Perspective of Data Visualization

  • Ling Jin, Jinxuan Yang, Dong Wen, Zuofeng Li and Xiaoyan Zhang
    Exploring Deep Learning Technique for Locus-Specific Databases Literature Detection

  • Daniela Gifu and Eric Curea
    Biomedical Information Retrieval
  • Programme


    MEDA 2018: 2nd Workshop on Curative Power of MEdical DAta
    Room EAD-514, University of North Texas Health Science Center
    3500 Camp Bowie Blvd, Fort Worth, TX 76107
    June 6, 2018, 10:30-17:00


    Session Chairs: Daniela Gîfu ("Alexandru Ioan Cuza" University of Iași, Romania & Romanian Academy - Iași Branch)
    Diana Trandabăț ("Alexandru Ioan Cuza" University of Iași, Romania)
    Kevin Cohen (Computational Bioscience Program U. Colorado School of Medicine, USA)

    10:30 am - 11:00 am
    Kevin Cohen, Daniela Gifu, Diana Trandabat, Jingbo Xia
    NLP for Biomedical Language

    11:00 am - 11:30 am
    Mihaela Onofrei, Ionut Hulub, Diana Trandabat and Daniela Gifu
    Towards Identifying Author Confidence in Biomedical Articles

    11:30 am - 12:00 am
    Ling Jin, Jinxuan Yang, Dong Wen, Zuofeng Li and Xiaoyan Zhang
    Exploring Deep Learning Technique for Locus-Specific Databases Literature Detection

    12:00 am - 12:30 am
    Maria Mitrofan, Verginica Barbu Mititelu and Grigorina Mitrofan
    Towards the Construction of a Gold Standard Biomedical Corpus for the Romanian Language

    12:30 am - 13:00 am
    Ahdi Hassan
    Developing a New Biomedical Corpora for Pakistan Languages

    13:00 am - 13:30 am
    Ionut Pistol, Dan Cristea, Diana Trandabat and Madalina Raschip
    Generating Tests from Medical Reference Texts

    13:30 am - 14:00 am
    Yongyi Wang, Hui Zhang, Dan Wu and Jiangping Chen
    Health Data on Data.gov: A Preliminary Analysis

    14:00 am - 14:30 am
    Daniela Gifu and Eric Curea
    Biomedical Information Retrieval

    14:30 am - 15:00 am
    Hui Zhang, Yongyi Wang, Dan Wu and Jiangping Chen
    Evolutionary Path of Factors Influencing Life Satisfaction among Chinese Elderly: A Perspective of Data Visualization

    15:00 am - 15:30 am
    Final Discussions

    Previous Editions


    Contact

    meda@info.uaic.ro



    Workshop Chairs



    Diana Trandabat

    Diana Trandabăț

    Faculty of Computer Science, University "Alexandru Ioan Cuza" of Iasi, Romania
    https://profs.info.uaic.ro/~dtrandabat/
    Daniela Gifu

    Daniela Gîfu

    Faculty of Computer Science, University "Alexandru Ioan Cuza" of Iasi, Romania
    Institute of Computer Science, Romanian Academy - Iasi Branch, Romania
    https://profs.info.uaic.ro/~daniela.gifu/
    Kevin Cohen

    Kevin Cohen

    Computational Bioscience Program U. Colorado School of Medicine
    https://www.colorado.edu/linguistics/kevin-cohen
    Jingbo Xia

    Jingbo Xia

    Huazhong Agricultural University, P.R. China
    http://xiajingbo.weebly.com/